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Make matching to an external library optional#297

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ErinWeisbart merged 1 commit intomasterfrom
separate_barcode_matching
May 5, 2026
Merged

Make matching to an external library optional#297
ErinWeisbart merged 1 commit intomasterfrom
separate_barcode_matching

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@bethac07
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Especially as we move into multi-part barcodes and since matching is slow currently (certainly easy to accelerate somehow, though perhaps dicey to try doing that inside CellProfiler given its "quirks" with multiprocessing), @ErinWeisbart and I discussed whether it might make it sense to separate barcode CALLING from matching to a list of expected barcodes. We had not previously wanted the extra step, but as we build more workflows for doing this, an extra step may be less onerous than previously. This rewrite preserves the option to do either.

@bethac07 bethac07 marked this pull request as draft November 14, 2025 17:33
@bethac07 bethac07 marked this pull request as ready for review April 19, 2026 14:35
@bethac07
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@ErinWeisbart tested, should be good to go

@ErinWeisbart ErinWeisbart merged commit e00e638 into master May 5, 2026
@ErinWeisbart ErinWeisbart deleted the separate_barcode_matching branch May 5, 2026 18:19
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2 participants