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Propagate enable_profiling through ProcessedContainerSettings#483

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jhiemstrawisc wants to merge 3 commits into
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jhiemstrawisc:fix-profiling
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Propagate enable_profiling through ProcessedContainerSettings#483
jhiemstrawisc wants to merge 3 commits into
Reed-CompBio:mainfrom
jhiemstrawisc:fix-profiling

Declare usage-profile.tsv as a reconstruct output

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