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Use synbiohub-docker snapshot in CI - #1749

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cjmyers merged 1 commit into
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marpaia/sbol-db-v0.1.3
Jul 31, 2026
Merged

Use synbiohub-docker snapshot in CI#1749
cjmyers merged 1 commit into
masterfrom
marpaia/sbol-db-v0.1.3

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@marpaia

@marpaia marpaia commented Jul 31, 2026

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Summary:

  • point the integration and search-conformance workflows at the maintained synbiohub-docker snapshot branch
  • consume the v0.1.3 sbol-db defaults merged in Update sbol-db to v0.1.3 synbiohub-docker#28
  • remove the stale dependency on the deleted marpaia/sbol-db-and-explorer branch

This addresses both failure modes in master run 30647783848: the Explorer matrix can check out its Docker topology again, and the store-only sbol-db job reruns against v0.1.3 with literal SPARQL as the default behavior.

Local validation:

  • python3 -m unittest tests/search-backends/test_run_conformance.py tests/search-backends/test_compare_reports.py
  • git diff --check

The decisive gate is this PR's full Integration testing workflow.

@cjmyers
cjmyers merged commit f29e95a into master Jul 31, 2026
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@cjmyers
cjmyers deleted the marpaia/sbol-db-v0.1.3 branch July 31, 2026 20:21
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2 participants