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Achievement: Pull Sharkx2Achievement: YOLO

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bioinfwithjudith/README.md

Welcome to (bioinf)ormatics (with) (judith)! 👋

About me:

  • Bioinformatics consultant for PR-INBRE Researchers
  • Ph.D. in Bioinformatics and Genomics, advised by Koslicki Lab
    • Master's in Bionformatics and Computational Biology
    • Majored in Cellular Molecular Biology
  • Interests:
    • protein-coding sequences, transcriptome, genomics, metagenomics
    • connecting biologists and computationalists through collaborative projects
    • introducing and teaching bioinformatic skills to beginners through workshops
  • Contact: judiths.r91@gmail.com

Current GitHub projects:

Past projects:

  • Use case examples for YACHT
  • workshops focused on python and sketching programs
  • identify robust features of mRNA degradation using feature selection models
  • YeasTSS
  • identify unique motifs for biosensor development using multiple sequence alignments

Pinned Loading

  1. KoslickiLab/YACHT KoslickiLab/YACHT Public

    A mathematically characterized hypothesis test for organism presence/absence in a metagenome

    C++ 37 11

  2. KoslickiLab/dnds-using-fmh KoslickiLab/dnds-using-fmh Public

    Python 3

  3. PR-INBRE_Python_Workshop PR-INBRE_Python_Workshop Public

    This workshop was developed for PR-INBRE.

    Jupyter Notebook 1 2

  4. KoslickiLab/DnDs-visualization KoslickiLab/DnDs-visualization Public

    A repo for the larger scale DnDs project, along with the visualization code

    Jupyter Notebook

  5. KoslickiLab/dnds_using_fmh_reproducibles KoslickiLab/dnds_using_fmh_reproducibles Public

    Python 1

  6. ONT_RNA_Assembly_PR-INBRE_pipeline ONT_RNA_Assembly_PR-INBRE_pipeline Public

    This pipeline provides a reproducible workflow for ONT Direct RNA-seq analysis on the Boquerón Cluster. It includes tools for data download, quality control, read filtering, alignment, transcript q…

    Nextflow