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Merged
daavid00 merged 1 commit into from
Aug 14, 2026
Merged

Bash scripts to check for papers outputs #44

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2 changes: 1 addition & 1 deletion tests/scripts/docs_all.sh
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Original file line number Diff line number Diff line change
Expand Up @@ -3,4 +3,4 @@
. tests/scripts/docs_non-regular_boundaries.sh &
wait

. ./tests/scripts/docs_check_figures.sh
. ./tests/scripts/docs_check_outputs.sh
6 changes: 3 additions & 3 deletions tests/scripts/docs_check_figures.sh → tests/scripts/docs_check_outputs.sh
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Expand Up @@ -10,7 +10,7 @@ files=(
"test_outputs/regular_boundaries/regional_rpr-3.png"
)

missing_file="test_outputs/missing_figures.txt"
missing_file="test_outputs/missing_docs_files.txt"
missing=0

rm -f "$missing_file"
Expand All @@ -23,8 +23,8 @@ for f in "${files[@]}"; do
done

if (( missing == 0 )); then
echo "All figures exist."
echo "All figures and files exist."
else
echo "$missing figure(s) missing."
echo "$missing figure(s) or file(s) missing."
echo "See $missing_file"
fi
46 changes: 46 additions & 0 deletions tests/scripts/paper_2025.sh
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Expand Up @@ -6,3 +6,49 @@ python3 $OUT/Case2/run_case2.py &
python3 $OUT/Case3/run_case3.py &
python3 $OUT/Case4/run_case4.py &
wait

files=(
"$OUT/Case4/Case_4_site_pres_pressure.png"
"$OUT/Case4/Case_4_reference_saturation.png"
"$OUT/Case4/Case_4_difference_site_pres_pressure.png"
"$OUT/Case4/Case_4_reference_pressure.png"
"$OUT/Case4/Case_4_difference_site_pres_saturation.png"
"$OUT/Case4/Case_4_regional_pressure.png"
"$OUT/Case4/Case_4_site_pres_saturation.png"
"$OUT/Case4/Case_4_regional_saturation.png"
"$OUT/Case2/comparegrid_0_40m_sensor_pressure_over_time.png"
"$OUT/Case2/comparegrid_0_40m_sensor_gasfluxi+_over_time.png"
"$OUT/Case3/compareeveryday_sensor_pressure_over_time.png"
"$OUT/Case1/Case_1_maximum_pressure_difference_over_time.png"
"$OUT/Case1/Case_1_difference_site_flux_pressure.png"
"$OUT/Case1/Case_1_difference_site_flux_gasfluxi+.png"
"$OUT/Case1/Case_1_maximum_gasfluxi+_difference_over_time.png"
"$OUT/Case1/Case_1_reference_saturation.png"
"$OUT/Case1/Case_1_reference_pressure.png"
"$OUT/Case1/Case_1_reference_watfluxi+.png"
"$OUT/Case1/Case_1_distance_from_border.png"
"$OUT/Case1/Case_1_difference_site_flux_saturation.png"
"$OUT/Case1/Case_1_difference_site_pres_saturation.png"
"$OUT/Case1/Case_1_summary_PR_site_reference.png"
"$OUT/Case1/Case_1_difference_site_pres_gasfluxi+.png"
"$OUT/Case1/Case_1_difference_site_pres_pressure.png"
)

missing_file="test_outputs/missing_paper_2025_files.txt"
missing=0

rm -f "$missing_file"

for f in "${files[@]}"; do
if [[ ! -f "$f" ]]; then
echo "$f" >> "$missing_file"
((missing++))
fi
done

if (( missing == 0 )); then
echo "All figures and files exist."
else
echo "$missing figure(s) or file(s) missing."
echo "See $missing_file"
fi
47 changes: 45 additions & 2 deletions tests/scripts/paper_ecmor2026.sh
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Expand Up @@ -6,9 +6,52 @@ OUT="test_outputs/paper_ecmor2026"
cp -r publications/ecmor2026/. $OUT
cd $OUT/method
. figure1.sh
cd $OUT/results_2d_synthetic_model
cd ../results_2d_synthetic_model
. figure2.sh
python3 figure3_table1.py
cd $OUT/results_3d_synthetic_model
cd ../results_3d_synthetic_model
python3 figure4_table2.py
cd $HOME

files=(
"$OUT/method/figure1d_bottom.png"
"$OUT/method/figure1b.png"
"$OUT/method/figure1d_top.png"
"$OUT/method/figure1c_bottom.png"
"$OUT/method/figure1a.png"
"$OUT/method/figure1c_top.png"
"$OUT/results_2d_synthetic_model/figure2.png"
"$OUT/results_2d_synthetic_model/figureb_dual_vertical_tf_absolute_error_extremes_8.png"
"$OUT/results_2d_synthetic_model/figurea_dual_no_vertical_tf_absolute_error_extremes_8.png"
"$OUT/results_2d_synthetic_model/table1_error_summary.csv"
"$OUT/results_2d_synthetic_model/figurea_standard_absolute_error_extremes_8.png"
"$OUT/results_2d_synthetic_model/standard_absolute_errors.csv"
"$OUT/results_2d_synthetic_model/dual_no_vertical_tf_absolute_errors.csv"
"$OUT/results_2d_synthetic_model/dual_vertical_tf_absolute_errors.csv"
"$OUT/results_3d_synthetic_model/figure4a_shortest.pvd"
"$OUT/results_3d_synthetic_model/figure4b_intermediate-0011.vtu"
"$OUT/results_3d_synthetic_model/table2.csv"
"$OUT/results_3d_synthetic_model/figure4b_intermediate.pvd"
"$OUT/results_3d_synthetic_model/figure4c_longest.pvd"
"$OUT/results_3d_synthetic_model/figure4a_shortest-0011.vtu"
"$OUT/results_3d_synthetic_model/figure4c_longest-0011.vtu"
)

missing_file="test_outputs/missing_paper_ecmor2026_files.txt"
missing=0

rm -f "$missing_file"

for f in "${files[@]}"; do
if [[ ! -f "$f" ]]; then
echo "$f" >> "$missing_file"
((missing++))
fi
done

if (( missing == 0 )); then
echo "All figures and files exist."
else
echo "$missing figure(s) or file(s) missing."
echo "See $missing_file"
fi
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