If the OWL API Wrapper is called with the following command, it fails to process the ontology because it's not able to handle the full path to the master file name. Currently, it expects the master filename to be passed in without the full path, just as a name. Need to add handling of both cases: a) when the master filename is passed in with the full path included; and b) when the master filename is passed in on its own:
Current behavior:
OWL API processes successfully:
-i /srv/ncbo/repository/ROR/1/unzipped -m ror.owl -o /srv/ncbo/repository/ROR/1 -r true
OWL API fails to process:
-i /srv/ncbo/repository/ROR/1/unzipped -m /srv/ncbo/repository/ROR/1/unzipped/ror.owl -o /srv/ncbo/repository/ROR/1 -r true
If the OWL API Wrapper is called with the following command, it fails to process the ontology because it's not able to handle the full path to the master file name. Currently, it expects the master filename to be passed in without the full path, just as a name. Need to add handling of both cases: a) when the master filename is passed in with the full path included; and b) when the master filename is passed in on its own:
Current behavior:
OWL API processes successfully:
OWL API fails to process: