HuBMAP Consortium

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22 packages

popv
Published Jun 2, 2023 by HuBMAP Consortium in hubmapconsortium/hra-workflows

129k
crosswalking
Published Oct 24, 2023 by HuBMAP Consortium in hubmapconsortium/hra-workflows

23.7k
starfish
Published Apr 29, 2021 by HuBMAP Consortium in hubmapconsortium/spatial-transcriptomics-pipeline

1.76k
spatial-transcriptomics-pipeline/starfish-docker-runner
Published Sep 17, 2022 by HuBMAP Consortium

1.59k
starfish-custom
Published Jun 24, 2021 by HuBMAP Consortium in hubmapconsortium/spatial-transcriptomics-pipeline

1.42k
celltypist
Published May 23, 2023 by HuBMAP Consortium in hubmapconsortium/hra-workflows

669
azimuth
Published Jun 7, 2023 by HuBMAP Consortium in hubmapconsortium/hra-workflows

599
preprocess
Published Aug 21, 2023 by HuBMAP Consortium in hubmapconsortium/hra-workflows

490
extract-summary
Published Aug 21, 2023 by HuBMAP Consortium in hubmapconsortium/hra-workflows

434
gene-expression
Published Oct 23, 2023 by HuBMAP Consortium in hubmapconsortium/hra-workflows

406
hra-workflows-runner
Published Aug 17, 2023 by HuBMAP Consortium in hubmapconsortium/hra-workflows-runner

374
main
Published Mar 8, 2021 by HuBMAP Consortium in hubmapconsortium/spatial-transcriptomics-pipeline

364
hra-do-processor
Published May 18, 2023 by HuBMAP Consortium in hubmapconsortium/hra-do-processor

271
hra-do-server
Published May 18, 2023 by HuBMAP Consortium in hubmapconsortium/hra-do-server

193
sprm
Published Mar 30, 2021 by HuBMAP Consortium in hubmapconsortium/sprm

178
frmatch
Published Jun 30, 2025 by HuBMAP Consortium in hubmapconsortium/hra-workflows

159
nsforest
Published Aug 12, 2025 by HuBMAP Consortium in hubmapconsortium/hra-workflows

140
pan-human-azimuth
Published May 13, 2025 by HuBMAP Consortium in hubmapconsortium/hra-workflows

137
qc
Published Oct 23, 2025 by HuBMAP Consortium in hubmapconsortium/hra-workflows

59
hra-tissue-block-annotation
Published Jun 24, 2026 by HuBMAP Consortium in hubmapconsortium/hra-tissue-block-annotation

6
hra-corridor-generation
Published Jun 24, 2026 by HuBMAP Consortium in hubmapconsortium/hra-corridor-generation

4
asctb-api
Published Jun 25, 2026 by HuBMAP Consortium in hubmapconsortium/ccf-asct-reporter

4