AlphaFold3_of3: fix install on Colab's Python 3.13 runtime - #849
Open
sokrypton wants to merge 1 commit into
Open
AlphaFold3_of3: fix install on Colab's Python 3.13 runtime#849sokrypton wants to merge 1 commit into
sokrypton wants to merge 1 commit into
Conversation
Colab moved its default runtime to Python 3.13 on 2026-08-25, and the install cell hardcoded the cp312 wheel filename, so pip rejected it with "not a supported wheel on this platform". Derive the interpreter tag from sys.version_info instead, preferring the release manifest so a changed platform tag still resolves, and pin alphafold3-open v3.1.5 (the first release shipping a cp313 wheel). Co-Authored-By: Claude Opus 5 (1M context) <noreply@anthropic.com>
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
Colab moved its default runtime to Python 3.13 on 2026-08-25 (colabtools#6081), which broke the install cell:
The cell hardcoded the
cp312wheel filename.cp312is ABI-specific (pybind11 extension, not abi3), so pip on 3.13 correctly rejects it.Fix
sys.version_infoinstead of hardcodingcp312Verified: v3.1.5 ships both wheels with identical platform tags, and the cp313 URL returns HTTP 200.
The rest of the stack already had cp313 wheels (
jaxlib/jax-cuda12-plugin0.10.1,rdkit2025.9.4;jax/dm-haiku/tokamaxare pure-Python), so no other pins needed changing.🤖 Generated with Claude Code