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TODO: on-loop slope field estimation and trajectory fitting with mellon

Status: Open.

#95 In stanfish06/scloop;

· stanfish06 opened on Jun 27, 2026

Collection of ideas

Status: Open.

#87 In stanfish06/scloop;

· stanfish06 opened on Apr 21, 2026

TODO: lazy loading of modules

Status: Open.

#85 In stanfish06/scloop;

· stanfish06 opened on Apr 21, 2026

TODO: refine trajectory fitting module

Status: Open.

#84 In stanfish06/scloop;

· stanfish06 opened on Apr 15, 2026

TODO: setup benchmark suite

Status: Open.

#83 In stanfish06/scloop;

· stanfish06 opened on Apr 6, 2026

BUG: type handling in loops function in _homology pl module

Status: Open.

#81 In stanfish06/scloop;

· stanfish06 opened on Mar 12, 2026

TODO: implement diffusion map and remove scanpy dep

Status: Open.

#78 In stanfish06/scloop;

· stanfish06 opened on Mar 6, 2026

TODO: more visualization approaches, such as tree view with loops, etc

Status: Open.

#77 In stanfish06/scloop;

· stanfish06 opened on Mar 6, 2026

TODO: metric selection + normalization for Hodge embedding

Status: Open.

#76 In stanfish06/scloop;

· stanfish06 opened on Mar 6, 2026

BUG: find_loops failed with too small homology threshold

Status: Open.

#75 In stanfish06/scloop;

· stanfish06 opened on Feb 23, 2026

TODO: save objects to h5ad

Status: Open.

#74 In stanfish06/scloop;

· stanfish06 opened on Feb 8, 2026

ISSUE: prepare logic, if use scvi, feature selection shouldnt be needed

Status: Open.

#73 In stanfish06/scloop;

· stanfish06 opened on Feb 4, 2026