I recently released jlibdeflate - a JNI wrapper around libdeflate. Libdeflate is usually several X faster than the JVM's built in zlib-based deflate compression, which I see used in Trimmomatic's block-compressed gzip output path.
I'd be happy to prep a PR to leverage jlibdeflate if that's of interest, but didn't want to submit one without asking first.
I recently released jlibdeflate - a JNI wrapper around libdeflate. Libdeflate is usually several X faster than the JVM's built in zlib-based deflate compression, which I see used in Trimmomatic's block-compressed gzip output path.
I'd be happy to prep a PR to leverage jlibdeflate if that's of interest, but didn't want to submit one without asking first.