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Trimmomatic malware concern

Status: Open.

#88 In usadellab/Trimmomatic;

· handibles opened on Jul 1, 2026

Any interest in a PR to leverage jlibdeflate for output file bgzip compression?

Status: Open.

#86 In usadellab/Trimmomatic;

· tfenne opened on Apr 8, 2026

Trimmomatic in Nextflow

Status: Open.

#81 In usadellab/Trimmomatic;

· paolamaragno opened on Aug 19, 2025

Not executable - Reg.

Status: Open.

#64 In usadellab/Trimmomatic;

· bioramg opened on Apr 7, 2024

Potential add on to Log File

Status: Open.

#62 In usadellab/Trimmomatic;

· AAA-3 opened on Jan 24, 2024

Error in tempfile()

Status: Open.

#61 In usadellab/Trimmomatic;

· tdyoshida opened on Dec 14, 2023

What is the extra 1 base in the Truseq adapter file (TruSeq3-PE-2.fa)

Status: Open.

#58 In usadellab/Trimmomatic;

· wjlim opened on Nov 3, 2023

Question about dealing with 10x data on trimmomatic

Status: Open.

#47 In usadellab/Trimmomatic;

· mat10d opened on Jan 31, 2023

if the adapter.fa is needed and when to set keepbothreads TRUE

Status: Open.

#45 In usadellab/Trimmomatic;

· taryl opened on Dec 8, 2022

paired read assignation

Status: Open.

#41 In usadellab/Trimmomatic;

· PavelEG opened on Oct 20, 2022

Run time error exception occur

Status: Open.

#40 In usadellab/Trimmomatic;

· GUNAJIV opened on Oct 8, 2022

Overrepresented sequences remain after adapter trimming

Status: Open.

#39 In usadellab/Trimmomatic;

· judy-m2 opened on Sep 20, 2022