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Is downsampling recommended or necessary in CUT&Tag analysis?

Status: Open.

#17 In yezhengSTAT/CUTTag_tutorial;

· zebr4rzlf opened on Jun 15, 2026

how to download hg38_gene.tsv?

Status: Open.

#15 In yezhengSTAT/CUTTag_tutorial;

· zysmu opened on Feb 19, 2025

convert bam to bed need sort

Status: Open.

#14 In yezhengSTAT/CUTTag_tutorial;

· YFan1997 opened on Dec 17, 2024

FRiPs calculation without IgG control

Status: Open.

#11 In yezhengSTAT/CUTTag_tutorial;

· MatteoFiumara opened on Mar 27, 2024

Duplication in E.coli genome

Status: Open.

#10 In yezhengSTAT/CUTTag_tutorial;

· bio-lilin opened on Jan 2, 2024

QC: nucleosomal-length fragments

Status: Open.

#9 In yezhengSTAT/CUTTag_tutorial;

· Minglu1998 opened on Mar 9, 2023

Cannot Picard SamSort and/or MarkDuplicate?

Status: Open.

#8 In yezhengSTAT/CUTTag_tutorial;

· kiddo18 opened on Dec 7, 2022

Downstream differential analysis

Status: Open.

#6 In yezhengSTAT/CUTTag_tutorial;

· loganminhdang opened on Jun 12, 2022

Puzzling enrichment peak

Status: Open.

#5 In yezhengSTAT/CUTTag_tutorial;

· Siteng999 opened on May 20, 2022

CUTTAG duplication

Status: Open.

#4 In yezhengSTAT/CUTTag_tutorial;

· lengfei5 opened on Jan 20, 2022

What does "25x25 PE Illumina sequencing" means and how does the reads length influence CUT&Tag?

Status: Open.

#3 In yezhengSTAT/CUTTag_tutorial;

· dyinboisry4u opened on May 16, 2021

A simple question

Status: Open.

#2 In yezhengSTAT/CUTTag_tutorial;

· renjincomeon opened on Feb 4, 2021